BIOREM and BIOSYSMO projects coorganise the MicrobeTech 2025 event, on 27-29 May 2025, at the Jožef Stefan Institute in Ljubljana (Slovenia) and online.
Experts from academia, industry, policymaking, and regulatory bodies across Europe will be there! Join us!
WORKSHOP + POSTER SESSION
BLOCK 1. Bridging the Lab-Field Gap in Bioremediation (CHAIR: DR. Rocío Barros)
09:10-09:30. Exploring bioavailability reductions as a paradigm shift in soil bioremediation. Jose Julio Ortega.
09:30-09:50. Application of Isotopic Methods to Explore Microbial Degradation and Fate of Organic Contaminants. Jose Carlos Castilla.
09:50-10:10. Nature’s Cleanup Crew: Using Microbiomes for Real-World Bioaugmentation. Simona Di Gregorio.
10:10-10:30. From the petri dish to a polluted soil: unravelling the complexity of sunflower ‘cryfor-help’ root exudation triggered by petroleum hydrocarbons. Elisa Ghitti.
10:30-10:50. Bioelectrochemical Technologies: Applications, Challenges, and Opportunities for Bioremediation and Beyond. Eduard Borras.
10:50-11:00. COFFEE BREAK
BLOCK 2. Microbial Deployment Strategies (CHAIR: Dr. Aleš Lapanje)
11:00-11:20. Encapsulation strategies of beneficial microorganisms in agriculture based on biodegradable polymers. Alberto González Chuliá.
11:20-11:40. Biodegradation of antibiotic pollutants – A way to tackle the spreading of ARGs in One Health context? . Philippe Corvini.
11:40-12:00. Engineered Pseudomonas putida for the Degradation of Soil Pollutants. Zheren Zhang.
12:00-13:00. LUNCH AND POSTER SESSION DISCUSSIONS
13:00-13:20. Integrating metagenomics and metabolic modeling for the rational design of microbial consortia in pollutant degradation. Sara Gil Guerrero.
13:20-13:40. Microbial Bioremediation in Ports: Addressing Hydrocarbon Pollution with Lyophilized Bacteria. Ana Paula Mucha.
BLOCK 3. Expanding applications beyond Bioremediation (CHAIR: Prof. Philippe Corvini)
13:40-14:00. Development of coated seeds with biological agents for a sustainable agriculture. David Palacios Santamaria.
14:00-14:20. Advanced tools for integration and synergistic inTeRconnectIon of microBIOMEs in resilient food systems. Daniel Scicchitano.
14:20-14:40. Electroactive microbial communities in bioremediation: The parts and the whole (and the little things in between). Claudio Avignone.
14:40-15:00. The potential of fungal application during the treatment of TPH and HTF-contaminated soils in biopiles as bioremediation strategy. Cynthia Alcántara.
15:00-15:10 COFFEE BREAK
BLOCK 4: Challenges, regulation and future directions (CHAIR: Dr. Sara Gil Guerrero)
15:10-15:30. Current state of regulation on soil bioremediation. David Donnerer.
15:30-15:50. Microbial response during bioremediation processes: advanced techniques currently applied in large-scale projects for monitor biotic remediation. Cynthia Alcántara.
15:50-16:10. Validation of bioremediation strategies for field application: challenges and opportunities. Alfredo Pérez de la Mora.
16:10-16:30. Nature-based solutions for wastewater management. Alenka Mubi Zalaznik.
SUMMER SCHOOL + POSTER SESSION.
09:00-09:45. Evolving Bioinformatics: From Microbial Petri Dishes to GPU-Accelerated Clusters and Beyond. Cristina Esteban (BIOSCAYLE).
09:45-10:30. From omics to models: Extracting functional information for bioremediation design. Akanksha Mishra, Alejandro González, Marta Franco (IDENER).
10:30-10:45. COFFEE BREAK
10:45-11:30. Constructing Networks in Microbiome Science: Advancing Our Understanding of Microbial Ecology and Behavior. Marco Candela (UNIBO).
11:30-12:15. Microbial-Assisted Phytoremediation: Tackling Pollution in Saltmarshes. Ana Paula Mucha (CIIMAR).
12:15-12:30. VOTING - BEST POSTER AWARD
12:30- LUNCH
Technical meetings for BIOREM and BIOSYSMO project partners.
10:00 to 12:00. BIOREM meeting.
12:00 to 13:00. POSTER DISCUSSIONS (NETWORKING) + LUNCH
13:00 to 17:00. BIOSYSMO meeting.
Find out the Speakers of the MicrobeTech 2025 event together with a summary of their presentations.
The speakers play a key role in sharing their knowledge, experience, and insights on the topics defined by the event. They contribute to the program by delivering presentations and participating in very interesting discussions, engaging with the audience. Their involvement enriches the event’s content and helps foster meaningful dialogue within the community.
The poster session will run throughout the three days of the event and participants will have the opportunity to present their work. See the list of submitted posters!
Microbial Viability & Biodegradation – Overcoming preservation challenges, microbial interactions, and optimizing degradation capacity.
Synergistic & Nanotechnology-Enhanced Systems – Integrating microbial consortia with advanced technologies, including nanoparticles, biofilms, and synthetic biology.
Bioreactors & Field Applications – Innovations in scalable bioreactors, encapsulation, controlled release, and real-world deployment.
Plant-Microbe Interactions & Phytoremediation – Exploring rhizosphere dynamics, microbial motility, chemotaxis, and fungal-based degradation strategies.
Computational & Genome-Scale Approaches – Leveraging community models, synthetic biology, and AI-driven optimization for microbial performance.
Sustainability & Circular Bioeconomy – Microbial solutions for soil and water remediation, climate change mitigation, and sustainable agriculture.
Language is English.
Length: 2 pages maximum (A4 format).
Page margins: Normal: top- 2,5’ bottom- 2,5’ left- 3’, right- 3’.
The manuscript must be typed with Single paragraph spacing, using font Calibri.
The title line is Calibri 14 pt - bold and centred.
Author-lines are 11 pt, normal and centred. Presenting author is underlined.
Abstract text is 11 pt, normal and justified.
References are 11 pt, normal and left. Format: APA.
For formulas or other denotations use “subscript” – H₂O.
Abstract should be structured including Introduction, State of the art, Results, Conclusions, References.
Guidelines for producing the poster:
Poster size is A0. Vertical orientation.
Ensure any text is in large font.
Make sure to incorporate the right logos (institution, project...).
Use graphs, charts, and/or tables.
Ensure contents have a logical flow.
Make it visually appealing.
The Scientific Committee is responsible for selecting the presentations and defining the main themes of the event. It ensures the academic and scientific quality of the content, evaluates submitted abstracts or proposals, and helps shape the program by identifying relevant topics, keynote speakers, and panel discussions. The committee also establishes evaluation criteria and maintains the overall coherence and rigor of the event’s scientific agenda.
Team Lead & Project Coordinator at IDENER.AI | PhD in Computational Chemistry.
BIOSYSMO coordinator.
SCIENTIFIC & ORGANISING COMMITTEE
Head of ICCRAM-EST (Environment, Sustainability and Toxicology) Group. University of Burgos.
BIOREM coordinator.
SCIENTIFIC & ORGANISING COMMITTEE
Head of Colloid Biology Group - Department of Environmental Sciences of the Jozef Stefan Insitute (JSI), Slovenia.
SCIENTIFIC & ORGANISING COMMITTEE
Senior Researcher. Colloid Biology Group - Department of Environmental Sciences of the Jozef Stefan Insitute (JSI), Slovenia.
SCIENTIFIC & ORGANISING COMMITTEE
The Jožef Stefan Institute (JSI) is a partner in the European projects BIOREM and BIOSYSMO.
JSI is the leading Slovenian scientific research institute, covering a broad spectrum of basic and applied research. The organisers of this event are the team of the Colloid Biology Laboratory.
Visit JSI Environment Sciences Department.
The Jožef Stefan Institute (JSI) has two activity centres in Ljubljana. The event will be held at the Reactor centre Podgorica (Brinje, 40).
Ljubljana is Slovenia's capital and the largest city of the country. With 293,000 population is one of the smallest European capitals. It’s never crowded – but also never boring. 50,000 university students give it its youthful appeal, and as an economic and cultural hub of Slovenia, it has a lot to offer to locals and visitors alike.